Re: Lost in loops

annascalise@xxxxxxxxx sez:
> Hi,
>
> I am really stuck with my program that will compare two strings and
> assign scores between pairs of letters.
>
> my sequences are read in ok
>
> seq1 = ATCGTCGTA
> seq2 = TCGTACTAA
>
> a second file formatted as so...
>
> A A 1
> T T 1
> C C 1
> G G 1
>
> is now in a 2D char array
>
> I just cannot think how on earth to get my values out of my array, i
> know if I get past this milestone I will be fine (I do not have much
> java experience or knowledge at my disposal - in fact it all i can do
> to understand the code I have wrote)

Heh. I'd suggest you read about FASTA, BLAST, and NLP algorithms
first.

Dima
--
We're sysadmins. Sanity happens to other people. -- Chris King
.

Relevant Pages

  • Re: Lost in loops
    ... >> I am really stuck with my program that will compare two strings and ... >> assign scores between pairs of letters. ... >> is now in a 2D char array ...
    (comp.lang.java.programmer)
  • Re: Lost in loops
    ... > a second file formatted as so... ... You don't say what you mean by "compare two strings", ... Refine this using powers of 2 if there are more than 10 different letters. ...
    (comp.lang.java.programmer)
  • string comparison?
    ... Remove the common words: ... Compare the remaining letters in both strings, ...
    (microsoft.public.vb.general.discussion)
  • Re: get(char*, num, delim) question
    ... you do not compare strings with == ... Get rid of this if you switch to an array. ... You need strcmp to copare the strings ... Modern C++ has a string class which is easier to use than a char array (or ...
    (comp.lang.cpp)
  • Re: structs for data transfer?
    ... > John Harrison wrote: ... >> Write some code to convert the struct you want to send into a char array. ... or sentinels and delimeters for the ends of strings. ...
    (comp.lang.cpp)