Re: Lost in loops


"Dimitri Maziuk" <dima@xxxxxxxxx> wrote in message
news:slrndtfciu.h1n.dima@xxxxxxxxxxxxxxxxxxxxxxxxxxx
> annascalise@xxxxxxxxx sez:
>> Hi,
>>
>> I am really stuck with my program that will compare two strings and
>> assign scores between pairs of letters.
>>
>> my sequences are read in ok
>>
>> seq1 = ATCGTCGTA
>> seq2 = TCGTACTAA
>>
>> a second file formatted as so...
>>
>> A A 1
>> T T 1
>> C C 1
>> G G 1
>>
>> is now in a 2D char array
>>
>> I just cannot think how on earth to get my values out of my array, i
>> know if I get past this milestone I will be fine (I do not have much
>> java experience or knowledge at my disposal - in fact it all i can do
>> to understand the code I have wrote)
>
> Heh. I'd suggest you read about FASTA, BLAST, and NLP algorithms
> first.

Not sure that that would be the order I would recommend, given that the
OP seems to be having problems grasping nested for-loops.

- Oliver


.

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