> "Gap sequence" might be a well-known term of art in your particular field,
> but this news group is dedicated to Perl, not your particular field. You
> will be more likely to get helpful replies if you explain what a gap
> sequence is.
>
oh, i didn't realize that sorry
i have 2 sequences like
ASDFGHJKLOIUYTREWQ and
ASDHJKLTREWQ
so when we align both sequence there is some GAP like
FG
OIUY.
so is there some module which can find that type of gap sequences.
hope it's better.
thanks
Re: Most valuable poster ... nylonase or lactase evolution examples. ...residues), you have the ability, so you say, to tell us *exactly* what ... the average gap size is based on the size of the end product. ...recognizable sequence homologs or recognizable intermediate functions. ... (talk.origins)
Re: The last ancestor of all life ... binds, in an beneficial way, to a particular protein antigen sequence....antibody binding to the antigen will be rewarded with improved ... differences that produce the gap problem for evolution. ... (talk.origins)
Re: Richard says Howard Hershey is wrong ... cytochrome c, the only sequence you have presented actual data for, is ... It is neither an "average" nor is it "gap... isn't "average gap size" at all. ..."sequence specificity" as cytochrome c. ... (talk.origins)
Re: Kenneth Millers Interview with NOVA ... first we have to calculate the likely gap size. ... Rather it is the ratio of the number of sequences that have a specific ... by recognizing that more than one sequence (so ... minimum likely gap distance is therefore always the minimum possible ... (talk.origins)
Re: The Relationship of Gaps to Thresholds ... other than a fair degree of sequence similarity.... Your MATH explicitly says that the size of the gap needed to be ... is roughly 30% of the total size of the end protein.... start at some average distance away (that distance being a function of ... (talk.origins)
